xml file Search Results


sbml file biomd0000000106.xml  (Biomodels LLC)
90
Biomodels LLC sbml file biomd0000000106.xml
Sbml File Biomd0000000106.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sbml file biomd0000000106.xml - by Bioz Stars, 2026-04
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xml file  (Wikimedia Foundation)
90
Wikimedia Foundation xml file
Xml File, supplied by Wikimedia Foundation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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xml file - by Bioz Stars, 2026-04
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xml neuromorphological file specification  (MBF Bioscience)
90
MBF Bioscience xml neuromorphological file specification
Xml Neuromorphological File Specification, supplied by MBF Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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xml neuromorphological file specification - by Bioz Stars, 2026-04
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eln xml file format  (CambridgeSoft Corporation)
90
CambridgeSoft Corporation eln xml file format
Eln Xml File Format, supplied by CambridgeSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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eln xml file format - by Bioz Stars, 2026-04
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opensim's xml file format  (OpenSim Ltd)
90
OpenSim Ltd opensim's xml file format
Opensim's Xml File Format, supplied by OpenSim Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
opensim's xml file format - by Bioz Stars, 2026-04
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imagecyclepump.xml config file  (Illumina Inc)
90
Illumina Inc imagecyclepump.xml config file
Imagecyclepump.Xml Config File, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
imagecyclepump.xml config file - by Bioz Stars, 2026-04
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xml files  (Human Protein Atlas)
90
Human Protein Atlas xml files
Xml Files, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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xml files - by Bioz Stars, 2026-04
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structured sbml file biomd151_new.xml  (Biomodels LLC)
90
Biomodels LLC structured sbml file biomd151_new.xml
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Structured Sbml File Biomd151 New.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/structured sbml file biomd151_new.xml/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
structured sbml file biomd151_new.xml - by Bioz Stars, 2026-04
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xml file  (Aperio Technologies)
90
Aperio Technologies xml file
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Xml File, supplied by Aperio Technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/xml file/product/Aperio Technologies
Average 90 stars, based on 1 article reviews
xml file - by Bioz Stars, 2026-04
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pro/engineer part file  (Unigraphics Solutions)
90
Unigraphics Solutions pro/engineer part file
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Pro/Engineer Part File, supplied by Unigraphics Solutions, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
pro/engineer part file - by Bioz Stars, 2026-04
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sbml file biomd0000000223.xml  (Biomodels LLC)
90
Biomodels LLC sbml file biomd0000000223.xml
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Sbml File Biomd0000000223.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/sbml file biomd0000000223.xml/product/Biomodels LLC
Average 90 stars, based on 1 article reviews
sbml file biomd0000000223.xml - by Bioz Stars, 2026-04
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xml file  (Hasegawa Co Ltd)
90
Hasegawa Co Ltd xml file
The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Xml File, supplied by Hasegawa Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/xml file/product/Hasegawa Co Ltd
Average 90 stars, based on 1 article reviews
xml file - by Bioz Stars, 2026-04
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Image Search Results


The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.

Journal: PLoS ONE

Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks

doi: 10.1371/journal.pone.0014284

Figure Lengend Snippet: The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.

Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured SBML file (BIOMD151_new.xml) can be found at http://contraintes.inria.fr/~soliman/ode2pn_data/ together with the biomodels version (BIOMD0000000151.xml), which actually contains more errors than found by , mostly concerning parameter names that are quite error-prone when hand-translated from ODEs to SBML.

Techniques:

The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.

Journal: PLoS ONE

Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks

doi: 10.1371/journal.pone.0014284

Figure Lengend Snippet: The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.

Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured SBML file (BIOMD151_new.xml) can be found at http://contraintes.inria.fr/~soliman/ode2pn_data/ together with the biomodels version (BIOMD0000000151.xml), which actually contains more errors than found by , mostly concerning parameter names that are quite error-prone when hand-translated from ODEs to SBML.

Techniques: Extraction